A method to choose water depths for zooplankton samples in lakes

Publication history: Accepted - 13 October 2021; Published online - 23 November 2021.As methods in the literature to sample zooplankton in lakes mostly offered general guidance on the sample depths, a new one was developed. Using the principle of volume-weighted sampling of the lake volume and an empirical function for the hypsometric curve, formulae for the volumes and areas of five equal sections of the lake were derived, which were then used to calculate section mean depths. Vertical net hauls taken at the mean depths are combined using a relation between their mean depths to produce one unbiased composite sample of the zooplankton. While generic formulae were derived, starting values for the depths that divide the lake volume into five equal sections are needed in order to apply the method, which then optimizes the depths; the method is implemented in a spreadsheet. The method was applied to four hypothetical lakes of maximum depth 12 m that cover a wide variation of lake form and how the sample depths vary with form was described; as lake form becomes more convex, the sample depths decrease, reflecting that more of the lake volume is at shallower depth. The method was used to estimate the whole-lake abundance of zooplankton in 51 lakes and no practical difficulties were encountered. It can be used in lakes up to a few tens of km2 in area.The INTERREG IVA Programme of the European Union’s European Regional Development Fund, managed by the Special European Union Programmes Body, funded this work. It formed part of the cross-border DOLMANT project (reference number 002862)

Evaluating macrophytes as indicators of anthropogenic pressures in rivers in Ireland

Publication history: Accepted - 6 January 2021; Published online - 10 February 2021.The ability of macrophytes to indicate pressures in rivers was assessed by comparing metrics for nitrate (NO3), ammonia (NH4), soluble reactive phosphorus (SRP), dissolved oxygen saturation (DO), pH (PH) and siltation (SUBS) with direct estimates of the pressures at 810 sites in the Republic of Ireland, supplemented with General Linear Models (GLMs). The bivariate and rank correlation coefficients using the full data range and the first and fourth quartiles of the river pressures varied between 0.22 and - 0.39 for NO3 and DO; they were smaller or not significant for the other four metrics. The GLMs provided evidence for an independent association between NO3 and the nitrate concentration and SUBS and ammonia, indicating some specificity for these metrics. Discriminating sites in the first and fourth quartiles produced Type II errors between 37 (PH) and 69% (NH4), with a mean of 50. As the pressure-impact relationships are not precise enough (low correlation coefficients) that evidence from a single macrophyte metric is reliable, combining the metric with evidence from other biological groups at one site or from three or more sites may be the most useful approach.Environmental Protection Agency of Ireland - funding of the DETECT Project (2015-W-LS-9) Burnley Borough Council - funding to AB

The past and future of phytoplankton in the UK's largest lake, Lough Neagh

Lough Neagh is the largest lake in the UK and has been extensively monitored since 1974. It has suffered from considerable eutrophication and toxic algal blooms. The lake continues to endure many of the symptoms of nutrient enrichment despite improvements in nutrient management throughout the catchment, in particular a permanently dominant crop of the cyanobacterium Planktothrix agardhii. This study examines the historical changes in the Lough, and uses the PROTECH lake model to predict how the phytoplankton community may adapt in response to potential future changes in air temperature and nutrient load. PROTECH was calibrated against 2008 observations, with a restriction on the maximum simulated mixed depth to reflect the shallow nature of the lake and the addition of sediment released phosphorus throughout the mixed water column between 1 May and 1 October (with an equivalent in-lake concentration of 2.0 mg m−3). The historical analysis showed that phytoplankton biomass (total chlorophyll a) experienced a steady decline since the mid-1990s. During the same period the key nutrients for phytoplankton growth in the lake have shown contrasting trends, with increases in phosphorus concentrations and declines in nitrate concentrations. The modelled future scenarios which simulated a temperature increase of up to 3 °C showed a continuation of those trends, i.e. total chlorophyll a and nitrate concentrations declined in the surface water, while phosphorus concentrations increased and P. agardhii dominated. However, scenarios which simulated a 4 °C increase in air temperature showed a switch in dominance to the cyanobacteria, Dolichospermum spp. (formerly Anabaena spp.). This change was caused by a temperature related increase in growth driving nutrient consumption to a point where nitrate was limiting, allowing the nitrogen-fixing Dolichospermum spp. to gain sufficient advantage. These results suggest that in the long term, one nuisance cyanobacteria bloom may only be replaced by another unless the in-lake phosphorus concentration can be greatly reduced

Long term abundance patterns of potamodromous brown trout in a large lacustrine catchment in County Fermanagh

Publication history: Accepted - 12 February 2021; Published online - 29 September 2021.Long-term survey data detailing brown trout abundance in the Lough Erne catchment in Co. Fermanagh were tabulated from 1968–2016. These data included redd counts and electric fishing surveys across three key spawning tributaries in addition to gill-net surveys of the lake. The abundance of spawning adults fluctuated widely across the time-series and were examined in relation to various pressures, including a major disease epidemic and the invasion of the catchment by zebra mussels. A functional stock-recruitment relationship between adult spawners and young-of-year juveniles in the spawning tributaries was identified and described. Redd counts were significantly lower for the post-zebra mussel time-series (2000–16) than the pre-zebra mussel time-series (1968–99). The post-zebra mussel invasion period was associated with increased water clarity, reduced plankton productivity and changes to the balance of coarse fish species in the lake. The significance of these changes is discussed in relation to the trout stock

A preliminary classification of lake types in Northern Ireland

The EC Water Framework Directive (WFD) introduces the concept of theecological status of surface waters. In order to compare the ecologicalstatus of, for example, lakes across Europe, methods based on either theidea of the continuum or of discrete biological communities need to bedeveloped. The best example of the use of the continuum approach is thatof RIVPACS for macroinvertebrates in rivers (Wright et al. 1998, 2000),and for discrete communities that of Johnson & Goedkoop (2000) for lakemacroinvertebrates

Impacts of forestry planting on primary production in upland lakes from north-west Ireland

Planted forests are increasing in many upland regions world-wide, but knowledge about their potential effects on algal communities of catchment lakes is relatively unknown. Here the effects of afforestation were investigated using palaeolimnology at six upland lake sites in the north-west of Ireland subject to different extents of forest plantation cover (4-64% of catchment area). 210Pb dated sediment cores were analysed for carotenoid pigments from algae, stable isotopes of bulk carbon (δ13C) and nitrogen (δ15N), and C/N ratios. In lakes with >50% of their catchment area covered by plantations, there were two- to six-fold increases in pigments from cryptophytes (alloxanthin) and significant but lower increases (39-116%) in those from colonial cyanobacteria (canthaxanthin), but no response from biomarkers of total algal abundance (β-carotene). In contrast, lakes in catchments with <20% afforestation exhibited no consistent response to forestry practices, although all lakes exhibited fluctuations in pigments and geochemical variables due to peat cutting and upland grazing prior to forest plantation. Taken together, patterns suggest that increases in cyanobacteria and cryptophyte abundance reflect a combination of mineral and nutrient enrichment associated with forest fertilisation and organic matter influx which may have facilitated growth of mixotrophic taxa. This study demonstrates that planted forests can alter the abundance and community structure of algae in upland humic lakes of Ireland and Northern Ireland, despite long histories of prior catchment disturbance

Metagenomic characterisation of the viral community of lough neagh, the largest freshwater lake in Ireland

Lough Neagh is the largest and the most economically important lake in Ireland. It is also one of the most nutrient rich amongst the world's major lakes. In this study, 16S rRNA analysis of total metagenomic DNA from the water column of Lough Neagh has revealed a high proportion of Cyanobacteria and low levels of Actinobacteria, Acidobacteria, Chloroflexi, and Firmicutes. The planktonic virome of Lough Neagh has been sequenced and 2,298,791 2×300 bp Illumina reads analysed. Comparison with previously characterised lakes demonstrates that the Lough Neagh viral community has the highest level of sequence diversity. Only about 15% of reads had homologs in the RefSeq database and tailed bacteriophages (Caudovirales) were identified as a major grouping. Within the Caudovirales, the Podoviridae and Siphoviridae were the two most dominant families (34.3% and 32.8% of the reads with sequence homology to the RefSeq database), while ssDNA bacteriophages constituted less than 1% of the virome. Putative cyanophages were found to be abundant. 66,450 viral contigs were assembled with the largest one being 58,805 bp; its existence, and that of another 34,467 bp contig, in the water column was confirmed. Analysis of the contigs confirmed the high abundance of cyanophages in the water column